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Scripting and coding
Automated image thresholding, and recording of macros in Fiji
The previous video showed how to set thresholds manually and measure area in Fiji. But there are further automation steps you can take.
Here, we introduce automated thresholding algorithms such as Otsu’s algorithm, and show how to record and repeat your workflow using macros.
This article is from the online course:
Introduction to Image Analysis for Plant Phenotyping
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This article is from the free online
Introduction to Image Analysis for Plant Phenotyping
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