Detection of resistance using Pathogenwatch
In this video, you can see how the Pathogenwatch tool can be used to detect antimicrobial resistance
Link to downloadable fasta file (Important – in order to download data from the Sanger ftp site, you will need to copy and paste the link in your internet browser, rather than just click on it):
ftp://ftp.sanger.ac.uk/pub/resources/coursesandconferences/Online_Courses/AMR/contigs.fasta
Link to ResFinder tool: https://cge.cbs.dtu.dk/services/ResFinder/
Bacterial Genomes: Antimicrobial Resistance in Bacterial Pathogens
Bacterial Genomes: Antimicrobial Resistance in Bacterial Pathogens
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