Practical: Accessing pixel data by coding in Fiji
As well as using the menus to operate Fiji, you can also interact with it programmatically using the script editor.
This practical shows you how to both get and set pixel values using Python in the script editor in Fiji. It also shows you how Fiji/ImageJ deals with colour pixel values.
All the instructions are in the attached pdf in the Downloads section below.
The image used in the example shown above can be found here: roots.jpg
Please let us know how you get on in the comments below.
Introduction to Image Analysis for Plant Phenotyping
Introduction to Image Analysis for Plant Phenotyping
Reach your personal and professional goals
Unlock access to hundreds of expert online courses and degrees from top universities and educators to gain accredited qualifications and professional CV-building certificates.
Join over 18 million learners to launch, switch or build upon your career, all at your own pace, across a wide range of topic areas.
