AI in protein function prediction
Next, Dr. Khanh Le will introduce AI in Variant Calling, AI in Protein Function Prediction AI in Protein Function Prediction. He will give a few examples of deep learning data …
Course: Artificial Intelligence in Bioinformatics
Basic of Artificial Intelligence
In this video, Dr. Khanh Le will explain two reasons for utilizing AI in Bioinformatics. The first one is because of the massive number of data. And the second one is …
Cell, Genetics, DNA sequence introduction
Bioinformatics research and application include the analysis of molecular sequence and genomics data. Dr. Khanh Le will explain the basic idea of DNA Sequence, transcription and translation, and Gene Expression. …
Overview on bioinformatics
Dr. Khanh Le will give you an outline for this course. First, he will give a short introduction to bioinformatics. Bioinformatics is an interdisciplinary field. It needs a lot of …
Weka demonstration
You can download Weka here. Please find the file for your operating system. You can use this manuel to help you familiar with Weka. Dr.Khanh provides ARFF files for you …
Using deep neural networks and biological subwords to detect protein S-sulfenylation sites
Please read the paper as an example of how to produce a bioinformatics paper. Protein S-sulfenylation is one kind of crucial post-translational modification (PTMs) in which the hydroxyl group covalently …
Deep learning
Please read the review article to understand clearly about deep learning as well as its applications in the real world. You could also download PDF from the link below. Deep …
ET-GRU: using multi-layer gated recurrent units to identify electron transport proteins
Please read the full paper published in BMC Bioinformatics and understand step-by-step of a bioinformatics case study. The electron transport chain is a series of protein complexes embedded in the …
Introduction to Weka and how to implement machine learning models
This week, we will have a demonstration at Weka. Please read the Weka documentation and understand how you can implement a simple machine learning model in Weka. This document is …
Machine learning in bioinformatics
Please take some time to read this paper published on Briefings in Bioinformatics. You can download PDF at the link below. This article is a review article that showed some …
Protein feature generation using iFeature
Please read the iFeature documentation and understand step-by-step of how to extract different features from protein sequences. iFeature is a comprehensive Python-based toolkit for generating various numerical feature representation schemes …