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Using and interpreting Nextclade

Video tutorial of using nextclade tool to assign clade and lineage for SARS-CoV-2 genomes

In this tutorial, you will learn how to assign clade and lineage to the assembled SARS-CoV-2 genomes.

The input of this tutorial is the assembled genomes generated in step 1-21 Using existing workflows on Galaxy. You can download this dataset if you would like to try and test the tutorial. If you prefer, you can just watch the video to learn how to assign SARS-CoV-2 clades using Nextclade

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Making sense of genomic data: COVID-19 web-based bioinformatics

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