Course: Introduction to Image Analysis for Plant Phenotyping

A continuation of our discussion on grayscale binary image thresholding. Introduces the so-called morphological operations erosion and dilation to tidy noisy patches in images before further analysis. Finally, the video …

Image segmentation algorithms aim to break the input image into regions that correspond to objects or materials of interest. In shoot phenotyping in the field, for example, a common first …

The Sobel edge detection method described in the video was developed in the late 1960s and was the first practical edge detection algorithm. While it remains effective and widely used …

A continuation of our video offering guidance on ways in which camera settings can be used to obtain better quality experimental images. Several camera settings affect the brightness, intensity and …

Well done for making it to the end of the course! Hopefully you have learned something about image analysis in plant phenotyping which will be useful to you. We also …

So far in the course we have covered the following: What is image analysis, and how can we use image data? The challenges of image analysis using plant data An …

A look at the model-based image analysis approach, and a more detailed description of one such approach, active contours or snakes. Model-based image analysis Model-based image analysis is distinguished from …

Volumetric Imaging Sometimes we wish to recover 3D information about a scene. When collecting a 3D image of an object we need a way to represent this as an image. …

Hyperspectral imaging enables the capture of vast amounts of data at a range of wavelengths both inside and outside the range of colours detectable by the human eye. This allows …

Contrast Enhancement Often, image data can be improved by increasing the spread of pixel intensities across the possible range of attainable values. This is known as contrast enhancement A simple …

Image noise is a common problem you may encounter when preparing images for analysis. The type of noise you will encounter will depend on the type and quality of your …

In this article we give a quick overview of how to go about using Python libraries, packages and modules in your code. You might hear the terms library, package and …

A common way of finding and updating a background image for use in motion detection is the use of median filtering. This practical shows you how to try this out …

In this article we will introduce the idea of colour spaces, a way of visualising and defining a range of colours. This will start with the RGB colour definitions we’ve …

Median filtering over the image space Filtering is a process by which we use the values of pixels to calculate a new value in their place. By calculating an average …