Course: Introduction to Image Analysis for Plant Phenotyping

In the previous article, we introduced the technique of binary thresholding, describing a classical approach, Otsu thresholding, and showing how to do this using Fiji. In this article we look …

Segmentation In many cases, especially when dealing with experimental images, you are dealing with a picture of a one or more discrete objects on a relatively plain background. If you …

The previous video outlined a process that was used to make 3D surface models of plant canopies using multiple view reconstruction and a range of image analysis techniques. In this …

As we have seen, often regions in thresholded images need tidying up to remove gaps in the thesholded foreground object, or remove noise in the background One way to do …

To round off the course we present a discussion between Tony Pridmore and Andy French about the challenges faced with image analysis for plant phenotyping and how they might be …

The first video describes the series of image analysis processes undertaken to produce 3D plant canopy models. Though the process as a whole is complex, each sub-task is some varation …

An introduction to image based 3D reconstruction using the concept of triangulation of images from multiple viewpoints. In this first video of the activity we introduce the basic principle of …

Continuing our discussion of image based reconstruction, we look at stereo correspondance or point matching. This video introduces the concept of the epipolar plane, and its use in matching points …

When image data is collected from an aerial imaging platform such as a UAV or a satellite, the result will often be many overlapping images, possibly from slightly different angles. …