Welcome back to Week 2 of the course. This week we look at using the Fiji tool, both to manually measure some features in some plant images, and also to …
It’s inevitible that sooner or later your Python code will fail and you’ll see an error message. This video covers some of the basics of how to read them and …
As we all know, video data contains a set of still images arranged in a sequence. This article shows you how to access frames at a specific time within a …
The final part of our overview on image segmentation methods. This video describes and demonstrates the spatial grouping method split and merge in more detail, using quadtrees.
A continuation of our overview of the main common types of image segmentation. In this video we look at clustering using the example of K-means clustering, and spatial grouping using …
Computers are particular good and repeating simple tasks many times, possibly with small changes each loop. One way to do this in Python and other programming languages is with a …
A look in more detail into the dilation algorithm code implemented in the preceding video. In the following practical exercise we will ask you to try and implement similar code, …
Images are a great way of capturing data from the world around us for later use. Image analysis seeks to formalise that process and quantify that data in some way, …
We saw how to perform dilation on thesholded images in the previous videos. This practical gives you a chance to try this for yourself, as well as adapting the code …
It’s common to process and analyse images purely using Python, rather than through via Fiji. The OpenCV library is one way to do this. This practical shows you how to …
A continuation of our video demonstrating ways to make measuments using Fiji. In this section we look at measuring areas, angles, bounding boxes in images and show how to count …
As well as using the menus to operate Fiji, you can also interact with it programmatically using the script editor. This practical shows you how to both get and set …
An introduction to examining and manipulating image data using Python. We start with the familiar example of thresholding grayscale images, but using Python in the Fiji script editor. Don’t worry …
A common method of contrast enhancement is histogram equalisation. This video briefly explains the process, and highlights some positives and negatives of it’s use in image analysis.